Plant Phenomics / 2019 / Article / Tab 1

Research Article

Precision Phenotyping Reveals Novel Loci for Quantitative Resistance to Septoria Tritici Blotch

Table 1

Chromosomal intervals defined by 26 significant GWAS associations and the phenotypic variance explained by each association. All chromosome intervals and base pair (BP) positions were defined based on the Chinese Spring reference genome (IWGSC 2018). PLACL = percentage of leaf area covered by lesions; PDL = pycnidia density within lesions (); MPA = mean pycnidia area (size); PGV = pycnidia gray value; NA = no associations.

TraitInterval IDChromosomeBP start of intervalBP end of intervalInterval sizeSNPs in intervalLODOther known STB R-genes in this region

PLACL15A6442751225606581,33135.510.065MQTL19
PLACL25A2081644520998554182,10945.950.068MQTL19
PLACL35B671238689671360289121,60035.930.089NA
PLACL45D161278626643141,051,52849.160.103NA
PDL52B6489127646519323243,019,56035.930.0782 Mbp away from MQTL8
PDL62B781584349781830297245,94835.590.0855 Mbp away from Stb9
PDL74A64889345165897023610,076,78546.370.021NA
PDL85D52615122608991238,284,00136.130.044NA
PDL95D4030758504130733769,997,52636.190.066NA
PDL106A4110952274159053554,810,12836.240.019Stb15
PDL116A4215273504252778063,750,45656.470.091Stb15
PDL126B175719208176403432684,22455.790.073QStb.6B
PDL136B4539316094554490001,517,39146.030.062QStb.6B
PDL146B4621302364687360166,605,78086.990.052QStb.6B
PDL156B4726098904741779531,568,06347.100.093QStb.6B
PDL166D39493630140634000811,403,70735.700.074NA
PDL177B26544172532598084460,539,11935.460.034NA
MPA182B2458882192479350452,046,82635.500.059MQTL17
PGV191A1236933212506454137,12266.640.083Qstb.1A
PGV201A47214087447216893028,05645.530.063NA
PGV212A6355811346399885224,407,38836.120.078MQTL15
PGV223B30319666322862281,966,56235.600.075QStb.3B
PGV234D48552493550240294616,878,01158.710.106NA
PGV245A68543819668553790099,70445.670.075QTL9
PGV255B44237482245573553313,360,71156.400.096Stb1
PGV267B656618918303012717,368,23666.340.078NA